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bulkdgd 2.0.0 documentation

Getting started
Installing bulkdgd
API reference
Command-line interface
Tutorials

Getting started
Installing bulkdgd
API reference
Command-line interface
Tutorials

Section Navigation

analysis - analyze data produced by the bulkdgd model
core - the bulkdgd model
genes - creating customized lists of genes
ioutil - utilities for I/O operations
plotting - plotting utilities
recount3 - interacting with Recount3
reproducibility - seeding a run
Configuration for creating an instance of the BulkDGD model
Configuration for the optimization scheme
Configuration for training the bulkdgd model

API reference
recount3 - interacting with Recount3

`recount3` - interacting with Recount3#

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plotting - plotting utilities

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reproducibility - seeding a run

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